In addition to the suggestions above, one alternative is to set up two terminals side by side and run the relevant tree and rsync commands to get the relevant information.
Here is an example in an image:
View attachment 24337
The image shows two directory trees side by side which the eye can compare with respect to both the directory filesystems and the sizes of the files.
The two terminals in this case were used within the tmux program, but any two terminals that can be placed adjacent to each other will work.
The command
tree -ah
is used since the -a option includes all files including the dotfiles. A comparison of the two outputs shows in fact that the only differences occur in the dotfiles in this example.
If the rsync command is run with the --dry-run option, it will show the differences in the two filesystems but not make any changes, as shown in the second terminal output in the image.