How can I repair the libraries on my system

[ryanvade]

Hello everybody.
I am having problems with program libraries on my system. Some don't seem to be located others not usable. I don't really know why. Here is the specific reasons why I think the libraries need fixed:

/usr/bin/ld: cuda_common.o: undefined reference to symbol '__gxx_personality_v0@@CXXABI_1.3'
/usr/bin/ld: note: '__gxx_personality_v0@@CXXABI_1.3' is defined in DSO /lib64/libstdc++.so.6 so try adding it to the linker command line
/lib64/libstdc++.so.6: could not read symbols: Invalid operation
collect2: ld returned 1 exit status
make[1]: *** [../run/john] Error 1
make[1]: Leaving directory `/home/ryan/Hacking-tools/john-1.7.9-jumbo-6/src'
make: *** [linux-x86-64-cuda] Error 2

make all 
Building target: deviceQuery
Invoking: NVCC Linker
nvcc -m64 -link -o  "deviceQuery"  ./src/deviceQuery.o   
/usr/local/cuda/bin/../lib64/libcudart.so: undefined reference to `std::__detail::_List_node_base::_M_unhook()@GLIBCXX_3.4.15'
/usr/local/cuda/bin/../lib64/libcudart.so: undefined reference to `std::__detail::_List_node_base::_M_hook(std::__detail::_List_node_base*)@GLIBCXX_3.4.15'
collect2: ld returned 1 exit status
make: *** [deviceQuery] Error 1

./adb: error while loading shared libraries: libncurses.so.5: cannot open shared object file: No such file or directory

sudo ldconfig
[sudo] password for ryan: 
ldconfig: /lib64/libgnome-menu.so.2 is not an ELF file - it has the wrong magic bytes at the start.

ldconfig: /lib64/libgnome-menu.so.2.4.13 is not an ELF file - it has the wrong magic bytes at the start.

 

[KenJackson]

This command runs through all the rpms on your system and verifies their contents. But it sometimes reports lots of insignificant stuff, so you could add --nomtime. The nine dots and letters are explained in the VERIFY OPTIONS section of man rpm.

rpm -Va

The Fedora Cuda page says to run this command to verify you have important libraries installed:

rpm --query --list xorg-x11-drv-nvidia-libs | grep -P '\.so(\.[123])?$'

 

[ryanvade]

thanks, can you give me more info?

Thank you for your advice. I will try this out...

rpm -Va

returned some errors, how can I fix them?

 

[KenJackson]

A lot of files get legitimately modified in some way during installation or operation, so I don't worry about them unless there's a problem. Though if you have an MD5 failure, "5", on an executable, that's probably cause for worry. If your think there's a problem with a package, you can do:
yum reinstall <package>